API Reference

• Streamline Angle Calculations (ccf_streamlines.angle)
  • Angle of streamlines
  • Nearest streamline
  • Affine matrix
• Coordinates (ccf_streamlines.coordinates)
  • Coordinate conversion
• Datasets (ccf_streamlines.dataset)
  • ISH data from the Allen Brain Atlas (mouse)
• Linestring 3D (ccf_streamlines.linestring3d)
  • Linestring 3D
• Metrics (ccf_streamlines.metrics)
  • Layer thickness
• Morphology (ccf_streamlines.morphology)
  • Transforming to volumes
  • Morphological analysis
  • I/O
• Utility Processing Functions (ccf_streamlines.projection)
  • Processing streamline paths
• Streamline Projection (ccf_streamlines.projection)
  • Projecting 3D volumes
  • Projecting sets of coordinates
  • Identifying cortical area boundaries