ccf_streamlines.projection.IsocortexEntireProjector#

class ccf_streamlines.projection.IsocortexEntireProjector(surface_paths_file, resolution=(10, 10, 10))#

Projection of common cortical framework volumes using every streamline

Parameters

  • surface_paths_file (str) – File path to an HDF5 file containing information about the paths between the top and bottom of cortex.

  • resolution (tuple, default (10, 10, 10)) – 3-tuple of voxel dimensions in microns

__init__(surface_paths_file, resolution=(10, 10, 10))#

Methods

__init__(surface_paths_file[, resolution])

project_volume(volume[, kind])

Perform an operation across all streamlines

top_of_streamline_coords([scale])

Get the 3D coordinates of the first voxels of every streamline